Related documentation
Related documentation¶
The majority of in-depth Mondo documentation is in Google Docs within the Mondo gDrive Documentation folder. The purpose of this page is to make it easier for Mondo editors to find the relevant documentation.
| Document | Summary | For who? |
|---|---|---|
| Mondo Life Cycle | Checklists of weekly tasks and workflow descriptions to maintain Mondo. | Mondo curators, Mondo developers, and leadership |
| Refresh Mondo Imports | Describes the steps to refresh the imports in Mondo. | Mondo developers |
| Mondo Ingest Development and Build Cycle | Checklists of weekly tasks to maintain mondo-ingest code and data to include in Mondo releases. | Mondo developers |
| Mondo Ingest Build Stats | Statistics for builds in the mondo-ingest repo, e.g. time to run, files updated, make goal executed, etc. | Mondo developers |
| Running Mondo Ingest Workflows | A technical guide for how to use the make pipeline | Mondo developers |
| Lexmatch pipeline (MISSING) | A description of the lexical match pipeline that is used to find matches between Mondo terms and external ontologies. | Mondo curators and developers |
| Migrate pipeline | Describes the pipeline that produces a list of candidate terms to be added / integrated into Mondo. | Mondo developers |
| Subclass Sync | Describes the Subclass Sync pipeline that synchronizes SCRs (SubClass Relationships / axioms) between Mondo and its sources, or provides a comparative analysis. | Mondo developers |
| Synonym Sync | Describes the Synonym sync pipeline that synchronizes synonyms between Mondo terms and their mapped source terms. | Mondo developers |
| OMIM Ingest Documentation - General Build | Describes the process to ingest data from OMIM and create data release files within the monarch-initiative/omim repo | Mondo developers |
| Mondo OMIM gene pipeline (MISSING) | Describes how disease defining gene associations are added into Mondo. | Mondo curators and developers |
| Externally Managed Content | Describes how to run the Externally Managed Content(EMC) pipeline in order to ingest content from trusted sources into Mondo. | Mondo developers |
| Monarch OLS | Describes how to load new ontologies into the Monarch instance of OLS and deploy OLS when new ontology versions of Mondo are released. | Mondo developers |